opt/conda/envs/b-soid/lib/python3.7/site-packages/sklearn/utils/deprecation.py:87: FutureWarning: Function plot_confusion_matrix is deprecated Function `plot_confusion_matrix` is deprecated in 1.0 and will be removed in 1.2. 10:18:13 INFO Done training feedforward neural network mapping (57596, 36) features to (57596,) assignments. 09:36:56 INFO Training feedforward neural network on randomly partitioned 80.0% of training data. 09:36:55 INFO Done predicting labels for 71996 instances in 3 D space. 09:36:07 INFO Adjusting minimum cluster size to maximize cluster number. 09:36:03 INFO Running HDBSCAN on 71996 instances in 3 D space.
09:36:03 INFO Done non-linear transformation with UMAP from 36 D into 3 D. 09:30:09 INFO Transforming all 71996 instances from 36 D into 3 D 09:30:09 INFO Done integrating features into 100ms bins from CSV file 4.
09:30:04 INFO Done integrating features into 100ms bins from CSV file 3. 09:29:59 INFO Done integrating features into 100ms bins from CSV file 2. 09:29:54 INFO Done integrating features into 100ms bins from CSV file 1. 09:29:50 INFO Done extracting features from a total of 4 training CSV files. 09:27:12 INFO Extracting features from CSV file 4. 09:24:35 INFO Extracting features from CSV file 3. 09:21:57 INFO Extracting features from CSV file 2. 09:19:21 INFO Extracting features from CSV file 1. 09:19:20 INFO Processed a total of 4 CSV files, and compiled into a (4, 107999, 12) data list. 09:19:20 INFO Processed 2 CSV files from folder: /Train2
09:19:20 INFO Done preprocessing (x,y) from file 2, folder 2. 09:19:13 INFO Computing data threshold to forward fill any sub-threshold (x,y). 09:19:13 INFO Extracting likelihood value. 09:19:12 INFO Importing CSV file 2 from folder 2 09:19:12 INFO Done preprocessing (x,y) from file 1, folder 2. 09:19:04 INFO Computing data threshold to forward fill any sub-threshold (x,y). 09:19:04 INFO Extracting likelihood value. 09:19:02 INFO Importing CSV file 1 from folder 2 09:19:02 INFO Processed 2 CSV files from folder: /Train1 09:19:02 INFO Done preprocessing (x,y) from file 2, folder 1. 09:18:54 INFO Computing data threshold to forward fill any sub-threshold (x,y). 09:18:54 INFO Extracting likelihood value. 09:18:53 INFO Importing CSV file 2 from folder 1 09:18:53 INFO Done preprocessing (x,y) from file 1, folder 1. 09:18:45 INFO Extracting likelihood value. 09:18:44 INFO Importing CSV file 1 from folder 1 In : f_10fps, f_10fps_sc, umap_embeddings, hdb_assignments, soft_assignments, soft_clusters, nn_classifier, scores, nn_assignments = bsoid_(TRAIN_FOLDERS) by editing properly the lines containing the string "user". Ĭustomoze the configuration files bsoid_py/config/LOCAL_CONFIG.py and bsoid_umap/config/LOCAL_CONFIG.py, e.g.
#FILE2FOLDER GUI CODE#
Loading singularity 3.8.5-1 on cn0897Ĭreate and enter the project folder, user]$ mkdir /data/$USER/B-SOID & cd /data/$USER/B-SOIDĬreate and populate data subfolders, user]$ mkdir -p datasets/Train1 datasets/Train2 user]$ cp $BSOID_DATA/bl6c57/041919/* user]$ cp $BSOID_DATA/bl6c57/042219/* datasets/Train2Ĭopy the B-SOID/1.3 source code to your current user]$ cp -r $BSOID_SRC/*. Sample sinteractive -gres=gpu:p100:1,lscratch:10 -mem=20g ~]$ module load b-soid Interactive jobs should be used for debugging, graphics, or applications that cannot be run as batch jobs.Īllocate an interactive session and run the program.
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